thagen/BioCause

This repository integrates the BioCause corpus into hf datasets. Please find the original dataset here. The data is sourced from the CREST aggregation. Please see the citations at the end of this README.

Usage

Causality Detection

from datasets import load_dataset
dataset = load_dataset("thagen/BioCause", "causality detection")

Causal Candidate Extraction

from datasets import load_dataset
dataset = load_dataset("thagen/BioCause", "causal candidate extraction")

Causality Identification

from datasets import load_dataset
dataset = load_dataset("thagen/BioCause", "causality identification")

Citations

The BioCause paper by Mihaila et al., 2013:

@article{mihaila:2013,
  title = {{{BioCause}}: {{Annotating}} and Analysing Causality in the Biomedical Domain},
  shorttitle = {{{BioCause}}},
  author = {Mihaila, Claudiu and Ohta, Tomoko and Pyysalo, Sampo and Ananiadou, Sophia},
  year = {2013},
  journal = {BMC Bioinform.},
  volume = {14},
  pages = {2},
  doi = {10.1186/1471-2105-14-2}
}

CREST by Hosseini et al., 2021 — whose aggregation we used to source the BioCause data:

@article{hosseini:2021,
  title = {Predicting {{Directionality}} in {{Causal Relations}} in {{Text}}},
  author = {Hosseini, Pedram and Broniatowski, David A. and Diab, Mona T.},
  year = {2021},
  journal = {CoRR},
  volume = {abs/2103.13606},
  eprint = {2103.13606},
  archiveprefix = {arXiv}
}