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Jul 13

Group Pose: A Simple Baseline for End-to-End Multi-person Pose Estimation

In this paper, we study the problem of end-to-end multi-person pose estimation. State-of-the-art solutions adopt the DETR-like framework, and mainly develop the complex decoder, e.g., regarding pose estimation as keypoint box detection and combining with human detection in ED-Pose, hierarchically predicting with pose decoder and joint (keypoint) decoder in PETR. We present a simple yet effective transformer approach, named Group Pose. We simply regard K-keypoint pose estimation as predicting a set of Ntimes K keypoint positions, each from a keypoint query, as well as representing each pose with an instance query for scoring N pose predictions. Motivated by the intuition that the interaction, among across-instance queries of different types, is not directly helpful, we make a simple modification to decoder self-attention. We replace single self-attention over all the Ntimes(K+1) queries with two subsequent group self-attentions: (i) N within-instance self-attention, with each over K keypoint queries and one instance query, and (ii) (K+1) same-type across-instance self-attention, each over N queries of the same type. The resulting decoder removes the interaction among across-instance type-different queries, easing the optimization and thus improving the performance. Experimental results on MS COCO and CrowdPose show that our approach without human box supervision is superior to previous methods with complex decoders, and even is slightly better than ED-Pose that uses human box supervision. https://github.com/Michel-liu/GroupPose-Paddle{rm Paddle} and https://github.com/Michel-liu/GroupPose{rm PyTorch} code are available.

  • 12 authors
·
Aug 14, 2023

Seeing the Forest and the Trees: Query-Aware Tokenizer for Long-Video Multimodal Language Models

Despite the recent advances in the video understanding ability of multimodal large language models (MLLMs), long video understanding remains a challenge. One of the main issues is that the number of vision tokens grows linearly with video length, which causes an explosion in attention cost, memory, and latency. To solve this challenge, we present Query-aware Token Selector (QTSplus), a lightweight yet powerful visual token selection module that serves as an information gate between the vision encoder and LLMs. Given a text query and video tokens, QTSplus dynamically selects the most important visual evidence for the input text query by (i) scoring visual tokens via cross-attention, (ii) predicting an instance-specific retention budget based on the complexity of the query, and (iii) selecting Top-n tokens with a differentiable straight-through estimator during training and a hard gate at inference. Furthermore, a small re-encoder preserves temporal order using absolute time information, enabling second-level localization while maintaining global coverage. Integrated into Qwen2.5-VL, QTSplus compresses the vision stream by up to 89\% and reduces end-to-end latency by 28\% on long videos. The evaluation on eight long video understanding benchmarks shows near-parity accuracy overall when compared with the original Qwen models and outperforms the original model by +20.5 and +5.6 points respectively on TempCompass direction and order accuracies. These results show that QTSplus is an effective, general mechanism for scaling MLLMs to real-world long-video scenarios while preserving task-relevant evidence. We will make all code, data, and trained models' weights publicly available.

AlpachinoNLP Alpachino
·
Nov 14, 2025

MISA: Mixture of Indexer Sparse Attention for Long-Context LLM Inference

DeepSeek Sparse Attention (DSA) sets the state of the art for fine-grained inference-time sparse attention by introducing a learned token-wise indexer that scores every prefix token and selects the most relevant ones for the main attention. To remain expressive, the indexer uses many query heads (for example, 64 on DeepSeek-V3.2) that share the same selected token set; this multi-head design is precisely what makes the indexer the dominant cost on long contexts. We propose MISA (Mixture of Indexer Sparse Attention), a drop-in replacement for the DSA indexer that treats its indexer heads as a pool of mixture-of-experts. A lightweight router uses cheap block-level statistics to pick a query-dependent subset of only a few active heads, and only those heads run the heavy token-level scoring. This preserves the diversity of the original indexer pool while reducing the per-query cost from scoring every prefix token with every head to scoring it with only a handful of routed heads, plus a negligible router term computed on a small set of pooled keys. We further introduce a hierarchical variant of MISA that uses the routed pass to keep an enlarged candidate set and then re-ranks it with the original DSA indexer to recover the final selected tokens almost exactly. With only eight active heads and no additional training, MISA matches the dense DSA indexer on LongBench across DeepSeek-V3.2 and GLM-5 while running with eight and four times fewer indexer heads respectively, and outperforms HISA on average. It also preserves fully green Needle-in-a-Haystack heatmaps up to a 128K-token context and recovers more than 92% of the tokens selected by the DSA indexer per layer. Our TileLang kernel delivers roughly a 3.82 times speedup over DSA's original indexer kernel on a single NVIDIA H200 GPU.

Surprised by Attention: Predictable Query Dynamics for Time Series Anomaly Detection

Multivariate time series anomalies often manifest as shifts in cross-channel dependencies rather than simple amplitude excursions. In autonomous driving, for instance, a steering command might be internally consistent but decouple from the resulting lateral acceleration. Residual-based detectors can miss such anomalies when flexible sequence models still reconstruct signals plausibly despite altered coordination. We introduce AxonAD, an unsupervised detector that treats multi-head attention query evolution as a short horizon predictable process. A gradient-updated reconstruction pathway is coupled with a history-only predictor that forecasts future query vectors from past context. This is trained via a masked predictor-target objective against an exponential moving average (EMA) target encoder. At inference, reconstruction error is combined with a tail-aggregated query mismatch score, which measures cosine deviation between predicted and target queries on recent timesteps. This dual approach provides sensitivity to structural dependency shifts while retaining amplitude-level detection. On proprietary in-vehicle telemetry with interval annotations and on the TSB-AD multi-variate suite (17 datasets, 180 series) with threshold-free and range-aware metrics, AxonAD improves ranking quality and temporal localization over strong baselines. Ablations confirm that query prediction and combined scoring are the primary drivers of the observed gains. Code is available at the URL https://github.com/iis-esslingen/AxonAD.

JurisTCU: A Brazilian Portuguese Information Retrieval Dataset with Query Relevance Judgments

This paper introduces JurisTCU, a Brazilian Portuguese dataset for legal information retrieval (LIR). The dataset is freely available and consists of 16,045 jurisprudential documents from the Brazilian Federal Court of Accounts, along with 150 queries annotated with relevance judgments. It addresses the scarcity of Portuguese-language LIR datasets with query relevance annotations. The queries are organized into three groups: real user keyword-based queries, synthetic keyword-based queries, and synthetic question-based queries. Relevance judgments were produced through a hybrid approach combining LLM-based scoring with expert domain validation. We used JurisTCU in 14 experiments using lexical search (document expansion methods) and semantic search (BERT-based and OpenAI embeddings). We show that the document expansion methods significantly improve the performance of standard BM25 search on this dataset, with improvements exceeding 45% in P@10, R@10, and nDCG@10 metrics when evaluating short keyword-based queries. Among the embedding models, the OpenAI models produced the best results, with improvements of approximately 70% in P@10, R@10, and nDCG@10 metrics for short keyword-based queries, suggesting that these dense embeddings capture semantic relationships in this domain, surpassing the reliance on lexical terms. Besides offering a dataset for the Portuguese-language IR research community, suitable for evaluating search systems, the results also contribute to enhancing a search system highly relevant to Brazilian citizens.

  • 5 authors
·
Mar 11, 2025

With Argus Eyes: Assessing Retrieval Gaps via Uncertainty Scoring to Detect and Remedy Retrieval Blind Spots

Reliable retrieval-augmented generation (RAG) systems depend fundamentally on the retriever's ability to find relevant information. We show that neural retrievers used in RAG systems have blind spots, which we define as the failure to retrieve entities that are relevant to the query, but have low similarity to the query embedding. We investigate the training-induced biases that cause such blind spot entities to be mapped to inaccessible parts of the embedding space, resulting in low retrievability. Using a large-scale dataset constructed from Wikidata relations and first paragraphs of Wikipedia, and our proposed Retrieval Probability Score (RPS), we show that blind spot risk in standard retrievers (e.g., CONTRIEVER, REASONIR) can be predicted pre-index from entity embedding geometry, avoiding expensive retrieval evaluations. To address these blind spots, we introduce ARGUS, a pipeline that enables the retrievability of high-risk (low-RPS) entities through targeted document augmentation from a knowledge base (KB), first paragraphs of Wikipedia, in our case. Extensive experiments on BRIGHT, IMPLIRET, and RAR-B show that ARGUS achieves consistent improvements across all evaluated retrievers (averaging +3.4 nDCG@5 and +4.5 nDCG@10 absolute points), with substantially larger gains in challenging subsets. These results establish that preemptively remedying blind spots is critical for building robust and trustworthy RAG systems (Code and Data).

  • 4 authors
·
Feb 9

QuoTA: Query-oriented Token Assignment via CoT Query Decouple for Long Video Comprehension

Recent advances in long video understanding typically mitigate visual redundancy through visual token pruning based on attention distribution. However, while existing methods employ post-hoc low-response token pruning in decoder layers, they overlook the input-level semantic correlation between visual tokens and instructions (query). In this paper, we propose QuoTA, an ante-hoc training-free modular that extends existing large video-language models (LVLMs) for visual token assignment based on query-oriented frame-level importance assessment. The query-oriented token selection is crucial as it aligns visual processing with task-specific requirements, optimizing token budget utilization while preserving semantically relevant content. Specifically, (i) QuoTA strategically allocates frame-level importance scores based on query relevance, enabling one-time visual token assignment before cross-modal interactions in decoder layers, (ii) we decouple the query through Chain-of-Thoughts reasoning to facilitate more precise LVLM-based frame importance scoring, and (iii) QuoTA offers a plug-and-play functionality that extends to existing LVLMs. Extensive experimental results demonstrate that implementing QuoTA with LLaVA-Video-7B yields an average performance improvement of 3.2% across six benchmarks (including Video-MME and MLVU) while operating within an identical visual token budget as the baseline. Codes are open-sourced at https://github.com/MAC-AutoML/QuoTA.

  • 11 authors
·
Mar 11, 2025 2

Prism-Reranker: Beyond Relevance Scoring -- Jointly Producing Contributions and Evidence for Agentic Retrieval

Modern retrieval pipelines increasingly serve downstream consumers like retrieval-augmented generation (RAG) and autonomous agents that need more than a scalar relevance score. A reranker that only tells the caller "how relevant" forces the agent to dump entire documents into the language-model context, wasting tokens on tangential passages and boilerplate. We introduce Prism-Reranker, a family of reranker models built on Qwen3.5 at four sizes (0.8B, 2B, 4B, 9B) that goes beyond scalar scoring. In addition to the standard yes/no relevance judgement, whenever the verdict is yes the model emits (i) a contribution statement summarizing how the document helps the query, and (ii) an evidence passage: a self-contained rewrite that preserves every query-relevant signal while discarding noise. Prism-Reranker is trained with a hybrid objective combining point-wise distillation from a strong commercial reranker API with supervised fine-tuning on contribution and evidence targets. We curate training data from KaLM-Embedding's open-source aggregation, augmented with real web documents retrieved via commercial search APIs for open-domain queries and LLM-synthesized variants, and rewrite a portion of queries into keyword-style reformulations to adapt the model to agent-issued traffic. To reconcile inconsistent labels across open corpora and obtain crisp binary supervision, we relabel data with an LLM-as-Judge ensemble aggregating votes from five frontier LLMs. On a QA subset of BEIR and on an LLM-judged evaluation of contribution and evidence quality, Prism-Reranker attains solid results across all four sizes. We further show that the same recipe extends existing LLM-based rerankers, augmenting Qwen3-Reranker-4B with contribution and evidence capabilities while improving its average BEIR-QA NDCG@10 by +1.54 over the base model. Model weights, training recipe, and evaluation suite are released.

  • 1 authors
·
Apr 25

Think, then Score: Decoupled Reasoning and Scoring for Video Reward Modeling

Recent advances in generative video models are increasingly driven by post-training and test-time scaling, both of which critically depend on the quality of video reward models (RMs). An ideal reward model should predict accurate rewards that align with human preferences across diverse scenarios. However, existing paradigms face a fundamental dilemma: Discriminative RMs regress rewards directly on features extracted by multimodal large language models (MLLMs) without explicit reasoning, making them prone to shortcut learning and heavily reliant on massive data scaling for generalization. In contrast, Generative RMs with Chain-of-Thought (CoT) reasoning exhibit superior interpretability and generalization potential, as they leverage fine-grained semantic supervision to internalize the rationales behind human preferences. However, they suffer from inherent optimization bottlenecks due to the coupling of reasoning and scoring within a single autoregressive inference chain. To harness the generalization benefits of CoT reasoning while mitigating the training instability of coupled reasoning and scoring, we introduce DeScore, a training-efficient and generalizable video reward model. DeScore employs a decoupled ``think-then-score'' paradigm: an MLLM first generates an explicit CoT, followed by a dedicated discriminative scoring module consisting of a learnable query token and a regression head that predicts the final reward. DeScore is optimized via a two-stage framework: (1) a discriminative cold start incorporating a random mask mechanism to ensure robust scoring capabilities, and (2) a dual-objective reinforcement learning stage that independently refines CoT reasoning quality and calibrates the final reward, ensuring that higher-quality reasoning directly translates to superior model performance.

  • 11 authors
·
May 6 2

Video-Bench: Human-Aligned Video Generation Benchmark

Video generation assessment is essential for ensuring that generative models produce visually realistic, high-quality videos while aligning with human expectations. Current video generation benchmarks fall into two main categories: traditional benchmarks, which use metrics and embeddings to evaluate generated video quality across multiple dimensions but often lack alignment with human judgments; and large language model (LLM)-based benchmarks, though capable of human-like reasoning, are constrained by a limited understanding of video quality metrics and cross-modal consistency. To address these challenges and establish a benchmark that better aligns with human preferences, this paper introduces Video-Bench, a comprehensive benchmark featuring a rich prompt suite and extensive evaluation dimensions. This benchmark represents the first attempt to systematically leverage MLLMs across all dimensions relevant to video generation assessment in generative models. By incorporating few-shot scoring and chain-of-query techniques, Video-Bench provides a structured, scalable approach to generated video evaluation. Experiments on advanced models including Sora demonstrate that Video-Bench achieves superior alignment with human preferences across all dimensions. Moreover, in instances where our framework's assessments diverge from human evaluations, it consistently offers more objective and accurate insights, suggesting an even greater potential advantage over traditional human judgment.

  • 13 authors
·
Apr 7, 2025

Time-Reversal Provides Unsupervised Feedback to LLMs

Large Language Models (LLMs) are typically trained to predict in the forward direction of time. However, recent works have shown that prompting these models to look back and critique their own generations can produce useful feedback. Motivated by this, we explore the question of whether LLMs can be empowered to think (predict and score) backwards to provide unsupervised feedback that complements forward LLMs. Towards this, we introduce Time Reversed Language Models (TRLMs), which can score and generate queries when conditioned on responses, effectively functioning in the reverse direction of time. Further, to effectively infer in the response to query direction, we pre-train and fine-tune a language model (TRLM-Ba) in the reverse token order from scratch. We show empirically (and theoretically in a stylized setting) that time-reversed models can indeed complement forward model predictions when used to score the query given response for re-ranking multiple forward generations. We obtain up to 5\% improvement on the widely used AlpacaEval Leaderboard over the competent baseline of best-of-N re-ranking using self log-perplexity scores. We further show that TRLM scoring outperforms conventional forward scoring of response given query, resulting in significant gains in applications such as citation generation and passage retrieval. We next leverage the generative ability of TRLM to augment or provide unsupervised feedback to input safety filters of LLMs, demonstrating a drastic reduction in false negative rate with negligible impact on false positive rates against several attacks published on the popular JailbreakBench leaderboard.

  • 6 authors
·
Dec 3, 2024

Simplified Sparse Attention via Gist Tokens

Sparse attention can reduce the cost of long-context inference, but most variants introduce new architectural components. We introduce Simplified Sparse Attention (SSA), a simpler approach to sparse attention that requires no architectural changes. Concretely, we first perform continued pretraining on sequences interleaved with gist tokens. We optimize the standard next-token loss as usual, but the gist tokens use an attention mask to restrict what parts of the context the language model can attend to; this teaches the model to pack each chunk's important information into the gist tokens. At inference time, SSA scores chunks via attention between the current query and the small set of gist tokens, selectively unfolding the top-k chunks by reintroducing their corresponding raw tokens. Since the query is scored only against the gist tokens, we avoid the memory-bandwidth cost associated with naive scoring against the full KV cache, without requiring the auxiliary KV cache approach used by sparse attention methods. On LongBench, SSA consistently outperforms compression and inference-time sparse-attention baselines under the same compression ratio. More strikingly, in retrieval-augmented generation, SSA can even outperform full attention after continued pretraining by over 5.7 points. We attribute this to the ability of SSA's selective unfolding, which concentrates attention on the query-relevant chunks and effectively filters out noise. SSA further extends to a hierarchical gist-of-gist variant (H-SSA) that achieves log-linear decoding complexity while maintaining or improving accuracy at high compression ratios up to 32x. The code is available at https://github.com/yuzhenmao/simplified-sparse-attention/.

Stanford Stanford AI
·
Jun 25 3

RAGdb: A Zero-Dependency, Embeddable Architecture for Multimodal Retrieval-Augmented Generation on the Edge

Retrieval-Augmented Generation (RAG) has established itself as the standard paradigm for grounding Large Language Models (LLMs) in domain-specific, up-to-date data. However, the prevailing architecture for RAG has evolved into a complex, distributed stack requiring cloud-hosted vector databases, heavy deep learning frameworks (e.g., PyTorch, CUDA), and high-latency embedding inference servers. This ``infrastructure bloat'' creates a significant barrier to entry for edge computing, air-gapped environments, and privacy-constrained applications where data sovereignty is paramount. This paper introduces RAGdb, a novel monolithic architecture that consolidates automated multimodal ingestion, ONNX-based extraction, and hybrid vector retrieval into a single, portable SQLite container. We propose a deterministic Hybrid Scoring Function (HSF) that combines sublinear TF-IDF vectorization with exact substring boosting, eliminating the need for GPU inference at query time. Experimental evaluation on an Intel i7-1165G7 consumer laptop demonstrates that RAGdb achieves 100\% Recall@1 for entity retrieval and an ingestion efficiency gain of 31.6x during incremental updates compared to cold starts. Furthermore, the system reduces disk footprint by approximately 99.5\% compared to standard Docker-based RAG stacks, establishing the ``Single-File Knowledge Container'' as a viable primitive for decentralized, local-first AI. Keywords: Edge AI, Retrieval-Augmented Generation, Vector Search, Green AI, Serverless Architecture, Knowledge Graphs, Efficient Computing.

  • 1 authors
·
Dec 8, 2025

Prompt-Free Universal Region Proposal Network

Identifying potential objects is critical for object recognition and analysis across various computer vision applications. Existing methods typically localize potential objects by relying on exemplar images, predefined categories, or textual descriptions. However, their reliance on image and text prompts often limits flexibility, restricting adaptability in real-world scenarios. In this paper, we introduce a novel Prompt-Free Universal Region Proposal Network (PF-RPN), which identifies potential objects without relying on external prompts. First, the Sparse Image-Aware Adapter (SIA) module performs initial localization of potential objects using a learnable query embedding dynamically updated with visual features. Next, the Cascade Self-Prompt (CSP) module identifies the remaining potential objects by leveraging the self-prompted learnable embedding, autonomously aggregating informative visual features in a cascading manner. Finally, the Centerness-Guided Query Selection (CG-QS) module facilitates the selection of high-quality query embeddings using a centerness scoring network. Our method can be optimized with limited data (e.g., 5% of MS COCO data) and applied directly to various object detection application domains for identifying potential objects without fine-tuning, such as underwater object detection, industrial defect detection, and remote sensing image object detection. Experimental results across 19 datasets validate the effectiveness of our method. Code is available at https://github.com/tangqh03/PF-RPN.

  • 6 authors
·
Mar 18 2

CT-FineBench: A Diagnostic Fidelity Benchmark for Fine-Grained Evaluation of CT Report Generation

The evaluation of generated reports remains a critical challenge in Computed Tomography (CT) report generation, due to the large volume of text, the diversity and complexity of findings, and the presence of fine-grained, disease-oriented attributes. Conventional evaluation metrics offer only coarse measures of lexical overlap or entity matching and fail to reflect the granular diagnostic accuracy required for clinical use. To address this gap, we propose CT-FineBench, a benchmark built from CT-RATE and Merlin to evaluate the fine-grained factual consistency of CT reports, constructed from CT-RATE and Merlin. Our benchmark is constructed through a meticulous, Question-Answering (QA) based process: first, we identify and structure key, finding-specific clinical attributes (like location, size, margin). Second, we systematically transform these attributes into a QA dataset, where questions probe for specific clinical details grounded in gold-standard reports. The evaluation protocol for CT-FineBench involves using this QA dataset to query a machine-generated report and scoring the correctness of the answers. This allows for a comprehensive, interpretable, and clinically-relevant assessment, moving beyond superficial lexical overlap to pinpoint specific clinical errors. Experiments show that CT-FineBench correlates better with expert clinical assessment and is substantially more sensitive to fine-grained factual errors than prior metrics.

  • 7 authors
·
Apr 26

GraphSearch: Agentic Search-Augmented Reasoning for Zero-Shot Graph Learning

Recent advances in search-augmented large reasoning models (LRMs) enable the retrieval of external knowledge to reduce hallucinations in multistep reasoning. However, their ability to operate on graph-structured data, prevalent in domains such as e-commerce, social networks, and scientific citations, remains underexplored. Unlike plain text corpora, graphs encode rich topological signals that connect related entities and can serve as valuable priors for retrieval, enabling more targeted search and improved reasoning efficiency. Yet, effectively leveraging such structure poses unique challenges, including the difficulty of generating graph-expressive queries and ensuring reliable retrieval that balances structural and semantic relevance. To address this gap, we introduce GraphSearch, the first framework that extends search-augmented reasoning to graph learning, enabling zero-shot graph learning without task-specific fine-tuning. GraphSearch combines a Graph-aware Query Planner, which disentangles search space (e.g., 1-hop, multi-hop, or global neighbors) from semantic queries, with a Graph-aware Retriever, which constructs candidate sets based on topology and ranks them using a hybrid scoring function. We further instantiate two traversal modes: GraphSearch-R, which recursively expands neighborhoods hop by hop, and GraphSearch-F, which flexibly retrieves across local and global neighborhoods without hop constraints. Extensive experiments across diverse benchmarks show that GraphSearch achieves competitive or even superior performance compared to supervised graph learning methods, setting state-of-the-art results in zero-shot node classification and link prediction. These findings position GraphSearch as a flexible and generalizable paradigm for agentic reasoning over graphs.

  • 4 authors
·
Jan 12

HyperRAG: Reasoning N-ary Facts over Hypergraphs for Retrieval Augmented Generation

Graph-based retrieval-augmented generation (RAG) methods, typically built on knowledge graphs (KGs) with binary relational facts, have shown promise in multi-hop open-domain QA. However, their rigid retrieval schemes and dense similarity search often introduce irrelevant context, increase computational overhead, and limit relational expressiveness. In contrast, n-ary hypergraphs encode higher-order relational facts that capture richer inter-entity dependencies and enable shallower, more efficient reasoning paths. To address this limitation, we propose HyperRAG, a RAG framework tailored for n-ary hypergraphs with two complementary retrieval variants: (i) HyperRetriever learns structural-semantic reasoning over n-ary facts to construct query-conditioned relational chains. It enables accurate factual tracking, adaptive high-order traversal, and interpretable multi-hop reasoning under context constraints. (ii) HyperMemory leverages the LLM's parametric memory to guide beam search, dynamically scoring n-ary facts and entities for query-aware path expansion. Extensive evaluations on WikiTopics (11 closed-domain datasets) and three open-domain QA benchmarks (HotpotQA, MuSiQue, and 2WikiMultiHopQA) validate HyperRAG's effectiveness. HyperRetriever achieves the highest answer accuracy overall, with average gains of 2.95% in MRR and 1.23% in Hits@10 over the strongest baseline. Qualitative analysis further shows that HyperRetriever bridges reasoning gaps through adaptive and interpretable n-ary chain construction, benefiting both open and closed-domain QA.

  • 8 authors
·
Feb 16

QuarkMedBench: A Real-World Scenario Driven Benchmark for Evaluating Large Language Models

While Large Language Models (LLMs) excel on standardized medical exams, high scores often fail to translate to high-quality responses for real-world medical queries. Current evaluations rely heavily on multiple-choice questions, failing to capture the unstructured, ambiguous, and long-tail complexities inherent in genuine user inquiries. To bridge this gap, we introduce QuarkMedBench, an ecologically valid benchmark tailored for real-world medical LLM assessment. We compiled a massive dataset spanning Clinical Care, Wellness Health, and Professional Inquiry, comprising 20,821 single-turn queries and 3,853 multi-turn sessions. To objectively evaluate open-ended answers, we propose an automated scoring framework that integrates multi-model consensus with evidence-based retrieval to dynamically generate 220,617 fine-grained scoring rubrics (~9.8 per query). During evaluation, hierarchical weighting and safety constraints structurally quantify medical accuracy, key-point coverage, and risk interception, effectively mitigating the high costs and subjectivity of human grading. Experimental results demonstrate that the generated rubrics achieve a 91.8% concordance rate with clinical expert blind audits, establishing highly dependable medical reliability. Crucially, baseline evaluations on this benchmark reveal significant performance disparities among state-of-the-art models when navigating real-world clinical nuances, highlighting the limitations of conventional exam-based metrics. Ultimately, QuarkMedBench establishes a rigorous, reproducible yardstick for measuring LLM performance on complex health issues, while its framework inherently supports dynamic knowledge updates to prevent benchmark obsolescence.

  • 16 authors
·
Mar 13

BioGraphFusion: Graph Knowledge Embedding for Biological Completion and Reasoning

Motivation: Biomedical knowledge graphs (KGs) are crucial for drug discovery and disease understanding, yet their completion and reasoning are challenging. Knowledge Embedding (KE) methods capture global semantics but struggle with dynamic structural integration, while Graph Neural Networks (GNNs) excel locally but often lack semantic understanding. Even ensemble approaches, including those leveraging language models, often fail to achieve a deep, adaptive, and synergistic co-evolution between semantic comprehension and structural learning. Addressing this critical gap in fostering continuous, reciprocal refinement between these two aspects in complex biomedical KGs is paramount. Results: We introduce BioGraphFusion, a novel framework for deeply synergistic semantic and structural learning. BioGraphFusion establishes a global semantic foundation via tensor decomposition, guiding an LSTM-driven mechanism to dynamically refine relation embeddings during graph propagation. This fosters adaptive interplay between semantic understanding and structural learning, further enhanced by query-guided subgraph construction and a hybrid scoring mechanism. Experiments across three key biomedical tasks demonstrate BioGraphFusion's superior performance over state-of-the-art KE, GNN, and ensemble models. A case study on Cutaneous Malignant Melanoma 1 (CMM1) highlights its ability to unveil biologically meaningful pathways. Availability and Implementation: Source code and all training data are freely available for download at https://github.com/Y-TARL/BioGraphFusion. Supplementary information: Supplementary data are available at Bioinformatics online.

  • 6 authors
·
Jul 19, 2025

HISA: Efficient Hierarchical Indexing for Fine-Grained Sparse Attention

Token-level sparse attention mechanisms, exemplified by DeepSeek Sparse Attention (DSA), achieve fine-grained key selection by scoring every historical token for each query using a lightweight indexer, and then computing attention only over the selected subset. While the downstream sparse attention scales efficiently, the indexer still scans the entire prefix for every query, introducing an O(L^2) per-layer bottleneck that becomes prohibitive as context length grows. We propose HISA (Hierarchical Indexed Sparse Attention), a drop-in replacement for the indexer that transforms the search process from a flat token scan into a two-stage hierarchical procedure. First, a block-level coarse filter scores pooled block representatives to prune irrelevant regions. Then, a token-level refinement applies the original indexer only within the remaining candidate blocks. HISA preserves the exact token-level top-k sparsity pattern required by the downstream Sparse MLA operator and requires no additional training. On kernel-level benchmarks, HISA achieves a 2times speedup at 32K context length and 4times at 128K. On Needle-in-a-Haystack and LongBench, we directly replace the indexer in DeepSeek-V3.2 with HISA, without any fine-tuning. HISA closely matches the original DSA in quality while significantly outperforming block-sparse baselines. Moreover, the token selection sets produced by HISA and the original DSA exhibit a mean IoU greater than 99%, indicating that the efficiency gains come with virtually no impact on selection fidelity.

Diagnose, Localize, Align: A Full-Stack Framework for Reliable LLM Multi-Agent Systems under Instruction Conflicts

Large Language Model (LLM)-powered multi-agent systems (MAS) have rapidly advanced collaborative reasoning, tool use, and role-specialized coordination in complex tasks. However, reliability-critical deployment remains hindered by a systemic failure mode: hierarchical compliance under instruction conflicts (system-user, peer-peer), where agents misprioritize system-level rules in the presence of competing demands. Moreover, widely used macro-level metrics (e.g., pass@k) obscure these micro-level violations and offer little actionable guidance for remedy. In this work, we present a full-stack, three-stage framework: (1) Diagnose - Contextualized Role Adherence Score (CRAS), a query-wise, context-aware scoring metric that decomposes role adherence into four measurable dimensions; (2) Localize - attention drift analysis revealing that instruction conflicts are resolved by attention heads that are largely concentrated in middle layers; (3) Align - Surgical Alignment of Instruction Layers (SAIL), which installs LoRA only on the localized focal layers and optimizes a token-weighted DPO-style preference objective that credits tokens by their focal attentional contribution. Across standard benchmarks and MAS frameworks, our surgical approach improves instruction hierarchy compliance (e.g., +5.60% with AutoGen on MedQA) without full-model finetuning.

  • 13 authors
·
Sep 27, 2025

AgentGrounder: Zero-Shot 3D Visual Pointcloud Grounding using Multimodal Language Models

3D Visual Grounding (3DVG) is an essential capability for embodied AI, requiring agents to localize objects in 3D scenes based on natural language descriptions. Recent zero-shot methods leverage 2D vision-language models (LVLMs). However, they often rely on existing sets of multi-view images and struggle with the limited semantic and spatial details provided by standard 3D segmentation tools. We present AgentGrounder, a zero-shot 3D visual grounding framework that operates directly on colored point clouds without task-specific 3D training. Our approach follows a two-stage design: (1) an offline stage that applies 3D model to build an Object Lookup Table (OLT) with instance IDs, semantic labels, 3D bounding boxes; and (2) an online tool-driven agent that decomposes each query, retrieves only relevant candidates from the OLT, performs geometric scoring, and triggers image rendering on demand when additional visual evidence (e.g., color, material, or viewpoint-sensitive cues) is required. Compared with fixed anchor-target matching pipelines, this design reduces cascading matching errors and improves context-window efficiency by avoiding prompts overloaded with irrelevant objects. We evaluate on ScanRefer and Nr3D under a zero-shot setting and observe consistent improvements over SeeGround in our setup, including +2.5% Acc@0.5 on ScanRefer and +6.3% on Nr3D, with a notable +6.3% gain on Nr3D view-independent queries. These results show that combining selective retrieval, geometric reasoning, and adaptive visual inspection yields a practical and robust foundation for open-vocabulary 3D grounding. Our code is available at https://github.com/be2rlab/AgentGrounder.

  • 4 authors
·
May 24

RCMHA: Relative Convolutional Multi-Head Attention for Natural Language Modelling

The Attention module finds common usage in language modeling, presenting distinct challenges within the broader scope of Natural Language Processing. Multi-Head Attention (MHA) employs an absolute positional encoding, which imposes limitations on token length and entails substantial memory consumption during the processing of embedded inputs. The current remedy proposed by researchers involves the utilization of relative positional encoding, similar to the approach adopted in Transformer-XL or Relative Multi-Head Attention (RMHA), albeit the employed architecture consumes considerable memory resources. To address these challenges, this study endeavors to refine MHA, leveraging relative positional encoding in conjunction with the Depth-Wise Convolutional Layer architecture, which promises heightened accuracy coupled with minimized memory usage. The proposed RCMHA framework entails the modification of two integral components: firstly, the application of the Depth-Wise Convolutional Layer to the input embedding, encompassing Query, Key, and Value parameters; secondly, the incorporation of Relative Positional Encoding into the attention scoring phase, harmoniously integrated with Scaled Dot-Product Attention. Empirical experiments underscore the advantages of RCMHA, wherein it exhibits superior accuracy, boasting a score of 0.572 in comparison to alternative attention modules such as MHA, Multi-DConv-Head Attention (MDHA), and RMHA. Concerning memory utilization, RMHA emerges as the most frugal, demonstrating an average consumption of 2.98 GB, surpassing RMHA which necessitates 3.5 GB.

  • 3 authors
·
Aug 7, 2023

Truncated Step-Level Sampling with Process Rewards for Retrieval-Augmented Reasoning

Training large language models to reason with search engines via reinforcement learning is hindered by a fundamental credit assignment problem: existing methods such as Search-R1 provide only a sparse outcome reward after an entire multi-step trajectory, making it infeasible to attribute success or failure to individual reasoning and retrieval decisions. Process-reward methods like StepSearch alleviate this by introducing step-level supervision, but rely on heuristic rewards such as TF-IDF overlap with gold documents, and still sample k complete trajectories per example, retaining high gradient variance. We propose SLATE, a framework built on two complementary ideas: (1) truncated step-level sampling, which generates k trajectories that share a common prefix and differ only at the next step, and (2) dense LLM-as-judge rewards, which replace heuristic scoring with a capable LLM evaluator that assesses the quality of each reasoning step, search query, and answer, providing richer and more reliable supervision. We theoretically prove that under the same dense reward structure, truncated sampling reduces the variance of advantage estimates by up to a factor of T compared to full-trajectory sampling for T-step trajectories, yielding lower-variance, better-targeted policy gradients. Experiments on seven QA benchmarks confirm that SLATE consistently outperforms both sparse-reward and process-reward baselines, with the largest gains on harder multi-hop tasks and smaller models.

NeuRBF: A Neural Fields Representation with Adaptive Radial Basis Functions

We present a novel type of neural fields that uses general radial bases for signal representation. State-of-the-art neural fields typically rely on grid-based representations for storing local neural features and N-dimensional linear kernels for interpolating features at continuous query points. The spatial positions of their neural features are fixed on grid nodes and cannot well adapt to target signals. Our method instead builds upon general radial bases with flexible kernel position and shape, which have higher spatial adaptivity and can more closely fit target signals. To further improve the channel-wise capacity of radial basis functions, we propose to compose them with multi-frequency sinusoid functions. This technique extends a radial basis to multiple Fourier radial bases of different frequency bands without requiring extra parameters, facilitating the representation of details. Moreover, by marrying adaptive radial bases with grid-based ones, our hybrid combination inherits both adaptivity and interpolation smoothness. We carefully designed weighting schemes to let radial bases adapt to different types of signals effectively. Our experiments on 2D image and 3D signed distance field representation demonstrate the higher accuracy and compactness of our method than prior arts. When applied to neural radiance field reconstruction, our method achieves state-of-the-art rendering quality, with small model size and comparable training speed.

  • 7 authors
·
Sep 27, 2023 2