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Push code: scripts, slurm sbatch, recipes, utils (v3 + selector series)
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import sqlite3
import multiprocessing.pool
import functools
import pandas as pd
import re
import sqlparse
from sql_metadata import Parser
from utils import get_table_columns_list, remove_table_alias, get_columns_in_select_clause, get_equation_function_in_select_clause, remove_table_alias
def timeout(max_timeout):
"""Timeout decorator, parameter in seconds."""
def timeout_decorator(item):
"""Wrap the original function."""
@functools.wraps(item)
def func_wrapper(*args, **kwargs):
"""Closure for function."""
pool = multiprocessing.pool.ThreadPool(processes=1)
async_result = pool.apply_async(item, args, kwargs)
# raises a TimeoutError if execution exceeds max_timeout
return async_result.get(max_timeout)
return func_wrapper
return timeout_decorator
@timeout(30)
def _execute_sql_with_timeout(db_path, action):
conn = sqlite3.connect(db_path)
conn.text_factory = lambda b: b.decode(errors="ignore")
actions = action.split(";")
actions = [x for x in actions if len(x.strip()) > 0]
if len(actions) == 0:
return "no SQL query executed.", True
cursor = conn.cursor()
for action in actions:
# action = action.lower()
try:
# cursor.execute(action)
# response = cursor.fetchall()
response = pd.read_sql_query(action, conn)
has_error = False
except Exception as error:
# If the SQL query is invalid, return error message from sqlite
response = str(error)
has_error = True
cursor.close()
break
cursor.close()
conn.close()
return response, has_error
def _execute_sql(db_path, sql_query):
try:
pred_result, has_error = _execute_sql_with_timeout(db_path, sql_query)
except:
pred_result = "The query takes too much time."
has_error = True
return pred_result, has_error
def _make_str_response(response, has_error):
if has_error:
return str(response)
else:
# df = pd.DataFrame(response)
# return str(df)
return str(response).strip()
def is_execution_correct(true_response, pred_response):
if type(true_response) == str and type(pred_response) == str:
return true_response == pred_response
elif type(true_response) == str and type(pred_response) != str:
return False
elif type(true_response) != str and type(pred_response) == str:
return False
else:
return set([tuple(x) for x in true_response.values.tolist()]) == set([tuple(x) for x in pred_response.values.tolist()])
# def get_answer(messages):
# response = client.chat.completions.create(
# model='codeS',
# messages=messages,
# max_tokens=2048,
# temperature=0.0,
# # eos_token_id=self.tokenizer.convert_tokens_to_ids(['<|end|>'])
# )
# response = response.choices[0].message.content.strip()
# return response
# def get_answer(messages):
# response = client.completions.create(
# model='meta-llama/Meta-Llama-3.1-8B-Instruct/',
# prompt=messages[0]['content'],
# max_tokens=256,
# temperature=0.0,
# use_beam_search=True,
# n=4,
# stop=['=========']
# # eos_token_id=self.tokenizer.convert_tokens_to_ids(['<|end|>'])
# )
# response = response.choices[0].text
# return response
def get_answer_vllm(messages):
import requests
response = requests.post("http://localhost:8000/v1/completions",
json={
"model": "meta-llama/Meta-Llama-3.1-8B-Instruct/",
"prompt": messages[0]['content'],
"max_tokens": 256,
"use_beam_search": True,
"n": 4,
"temperature": 0,
"stop": ["========="]
}).json()
return response["choices"][0]["text"]
def get_answer_llamacpp(messages):
import requests
response = requests.post("http://localhost:8000/v1/completions",
json={
"model": "meta-llama/Meta-Llama-3.1-8B-Instruct/",
"prompt": messages[0]['content'],
"n_predict": 256,
"stop": ["========="]
}).json()
return response["content"]
class ValidatorSelect:
def __init__(self, endpoint_type='llamacpp'):
pd.set_option('display.max_rows', 5)
pd.set_option('display.max_columns', 10)
if endpoint_type == 'llamacpp':
self.get_answer = get_answer_llamacpp
elif endpoint_type == 'vllm':
self.get_answer = get_answer_vllm
self.prompt_template = open('./few_shot_prompt_select.txt').read() + """=========
{schema}
Matched contents are written in this format table.column (some values can be found in that column)
{matched_content}
Question: {question}
SQL query: {sql_query}
Execution response [written in pandas format]:
{execution_response}
Feedback:
SELECT.
1. Based on the SQL query, the query selects: {select_columns}"""
def check_able_to_comment(self, sql_query):
equations = get_equation_function_in_select_clause(sql_query)
if len(equations) == 0:
return True
able_to_comment_equations = ['min', 'max', 'sum', 'avg', 'divide', '+', '/']
# if equation doesn't contain any other than the above, then can comment
for equation in equations:
if equation not in able_to_comment_equations:
return False
return True
def comment(self, sql, sample, execution_result):
try:
select_columns = get_columns_in_select_clause(sql, sample['schema'])
if len(select_columns) == 0:
select_columns = ""
except:
select_columns = ""
prompt = self.prompt_template.format(
schema=sample['schema_sequence'],
matched_content=sample['content_sequence'],
question=sample['text'],
sql_query=sql,
execution_response=_make_str_response(*execution_result),
select_columns=select_columns
)
answer = prompt.split("Feedback:")[-1] + self.get_answer([{"role": "user", "content": prompt}])
return answer
def validate(self, sample):
able_to_comment = self.check_able_to_comment(sample['predict_sql'])
execution_result = _execute_sql("../" + sample['db_path'], sample['predict_sql'])
if able_to_comment:
# generate comment using few-shot prompting
answer = self.comment(sample['predict_sql'], sample, execution_result)
return answer, execution_result
else:
return None, execution_result
class ValidatorJOIN:
def __init__(self, endpoint_type='llamacpp'):
pd.set_option('display.max_rows', 5)
pd.set_option('display.max_columns', 10)
if endpoint_type == 'llamacpp':
self.get_answer = get_answer_llamacpp
elif endpoint_type == 'vllm':
self.get_answer = get_answer_vllm
self.prompt_template = open('./few_shot_prompt_join.txt').read() + """=========
{schema}
Matched contents are written in this format table.column (some values can be found in that column)
{matched_content}
Question: {question}
SQL query: {sql_query}
Execution response [written in pandas format]:
{execution_response}
Feedback:
JOIN.
- The SQL query uses tables {used_tables}, joining them on foreign keys {used_fks}."""
def get_table_list(self, schema):
tables = []
for table_data in schema['schema_items']:
table_name = table_data['table_name'].lower()
tables.append(table_name)
tables = list(set(tables))
return tables
def extract_join_clause(self, sql_query):
# Define a regex pattern to match the SELECT clause up to the FROM keyword
pattern = re.compile(r"FROM\s.*?\s(?=WHERE)", re.IGNORECASE | re.DOTALL)
# Search for the pattern in the SQL query
match = pattern.search(sql_query)
if match:
# Return the matched portion (SELECT clause)
return match.group(0).strip()
else:
pattern = re.compile(r"FROM.+", re.IGNORECASE | re.DOTALL)
# Return None if no match is found
# Search for the pattern in the SQL query
match = pattern.search(sql_query)
if match:
# Return the matched portion (SELECT clause)
return match.group(0).strip()
else:
return None
def get_used_fks(self, sql_query):
# use re, get all condition join after ON
pattern = re.compile(r" ON\s.*?(?=\sWHERE|\sORDER BY|\sLIMIT|\sGROUP BY)", re.IGNORECASE | re.DOTALL)
match = pattern.findall(sql_query)
return match
def get_tables_in_join_clause(self, sql_query, schema):
table_list = self.get_table_list(schema)
sql_query = remove_table_alias(sqlparse.format(sql_query, keyword_case = "upper", identifier_case = "lower"))
join_clause = self.extract_join_clause(sql_query)
used_tables = []
for token in join_clause.split():
if token in table_list:
used_tables.append(token)
used_fks = self.get_used_fks(sql_query)
return used_tables, used_fks
def validate(self, sample):
execution_result = _execute_sql("../" + sample['db_path'], sample['predict_sql'])
used_tables, used_fks = self.get_tables_in_join_clause(sample['predict_sql'], sample['schema'])
prompt = self.prompt_template.format(
schema=sample['schema_sequence'],
matched_content=sample['content_sequence'],
question=sample['text'],
sql_query=sample['predict_sql'],
execution_response=_make_str_response(*execution_result),
used_tables=used_tables,
used_fks=used_fks
)
answer = prompt.split("Feedback:")[-1] + self.get_answer([{"role": "user", "content": prompt}])
return answer, execution_result
class FixAgent:
def __init__(self, prompt_template, endpoint_type='llamacpp'):
self.prompt_template = prompt_template
if endpoint_type == 'llamacpp':
self.get_answer = get_answer_llamacpp
elif endpoint_type == 'vllm':
self.get_answer = get_answer_vllm
class ValidatorOrder:
def __init__(self, endpoint_type='llamacpp'):
pd.set_option('display.max_rows', 5)
pd.set_option('display.max_columns', 10)
if endpoint_type == 'llamacpp':
self.get_answer = get_answer_llamacpp
elif endpoint_type == 'vllm':
self.get_answer = get_answer_vllm
self.prompt_no_none = open('./few_shot_prompt_order.txt').read().replace("{", "{{").replace("}", "}}") + """
=========
{schema}
Matched contents are written in this format table.column (some values can be found in that column)
{matched_content}
Question: {question}
SQL query: {sql_query}
Execution response [written in pandas format]:
{execution_response}
Feedback:
ORDER BY.
- The SQL query uses ```{order_by_clause}```.
- Based on the question, the query should use"""
self.prompt_has_none = open('./few_shot_prompt_order.txt').read().replace("{", "{{").replace("}", "}}") + """
=========
{schema}
Matched contents are written in this format table.column (some values can be found in that column)
{matched_content}
Question: {question}
SQL query: {sql_query}
Execution response [written in pandas format]:
{execution_response}
Feedback:
ORDER BY.
- The SQL query uses ```{order_by_clause}```.
- However, the column ```{order_by_column}```` has None values, so the SQL query need to add condition ```{order_by_column} IS NOT NULL``` to filter out None values.
- Conclude: incorrect."""
def get_table_list(self, schema):
tables = []
for table_data in schema['schema_items']:
table_name = table_data['table_name'].lower()
tables.append(table_name)
tables = list(set(tables))
return tables
def extract_order_clause(self, sql_tokens):
# extract order by clause given sql_tokens is a list, find start index of order by token
order_by_index = -1
for i in range(len(sql_tokens)):
if sql_tokens[i] == "order by":
order_by_index = i
break
# return order clause
if order_by_index == -1:
return []
else:
return sql_tokens[order_by_index:]
def extract_order_by_clause_using_regex(self, sql_query):
# use regex on sql_query to extract order by clause
order_by_clause = re.search(r'(?i)ORDER BY\s+(.*)', sql_query)
if order_by_clause is None:
return None
else:
return order_by_clause.group(1)
def get_columns_in_order_clause(self, sql_query, schema):
column_list = get_table_columns_list(schema)
try:
sql_tokens = [token.value for token in Parser(sql_query.lower()).tokens]
except Exception as e:
sql_tokens = sql_query.lower().split()
order_clause_tokens = self.extract_order_clause(sql_tokens)
equation_functions = []
for token in order_clause_tokens:
if token in ["min", "max", "avg", "sum", "count", "divide", "+", "/", "case", "when"]:
equation_functions.append(token)
# use regex on sql_query to extract order by clause
order_by_clause = self.extract_order_by_clause_using_regex(sql_query)
if len(equation_functions) > 0:
return None, order_by_clause # not supported yet
else:
columns = []
for token in order_clause_tokens:
if token in column_list:
columns.append(token)
# norm columns list, add table.column if '.' not present. table can extract using regex on sql query SELECT x FROM table
norm_columns = []
for column in columns:
if "." not in column:
# regex find table name right after the word 'FROM', table name can be wrapped inside ``
table = re.search(r'(?i)FROM\s+`?(\w+)`?', sql_query).group(1)
norm_columns.append(f"{table}.{column}")
else:
norm_columns.append(column)
return norm_columns, order_by_clause
def get_column_type(self, column, schema):
# column is a string in form 'table.column' or 'column'
if "." in column:
table, column = column.split(".")
for table_data in schema['schema_items']:
if table_data['table_name'] == table:
for column_name, column_type in zip(table_data['column_names'], table_data['column_types']):
if column_name == column:
return column_type
else:
for table_data in schema['schema_items']:
for column_name, column_type in zip(table_data['column_names'], table_data['column_types']):
if column_name == column:
return column_type
def check_order_by_column_has_none_values(self, column, db_path):
# use sql query to check if column has none values
conn = sqlite3.connect(db_path)
c = conn.cursor()
table_name = column.split(".")[0]
column_name = column.split(".")[1]
query = f"SELECT COUNT(*) FROM `{table_name}` WHERE `{column_name}` IS NULL"
c.execute(query)
result = c.fetchall()
conn.close()
if result[0][0] > 0:
return True
else:
return False
def validate(self, sample):
execution_result = _execute_sql("../" + sample['db_path'], sample['predict_sql'])
order_columns, order_by_clause = self.get_columns_in_order_clause(sample['predict_sql'], sample['schema'])
if order_columns is not None and len(order_columns) > 0:
column = order_columns[0]
if self.check_order_by_column_has_none_values(column, "../" + sample['db_path']):
prompt = self.prompt_has_none.format(
schema=sample['schema_sequence'],
matched_content=sample['content_sequence'],
question=sample['text'],
sql_query=sample['predict_sql'],
execution_response=_make_str_response(*execution_result),
order_by_clause=order_by_clause,
order_by_column=column
)
answer = prompt.split("Feedback:")[-1]
return answer, execution_result
else:
prompt = self.prompt_no_none.format(
schema=sample['schema_sequence'],
matched_content=sample['content_sequence'],
question=sample['text'],
sql_query=sample['predict_sql'],
execution_response=_make_str_response(*execution_result),
order_by_clause=order_by_clause)
answer = prompt.split("Feedback:")[-1] + self.get_answer([{"role": "user", "content": prompt}])
else:
answer = None
return answer, execution_result