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Push code: scripts, slurm sbatch, recipes, utils (v3 + selector series)
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from sql_metadata import Parser
import re
import os
import sqlparse
def remove_table_alias(s):
try:
tables_aliases = Parser(s).tables_aliases
except Exception as e:
return s
new_tables_aliases = {}
for i in range(1,11):
if "t{}".format(i) in tables_aliases.keys():
new_tables_aliases["t{}".format(i)] = tables_aliases["t{}".format(i)]
tables_aliases = new_tables_aliases
for k, v in tables_aliases.items():
# remove AS clauses
s = s.replace("AS " + k + " ", "")
# replace table alias with thier original names
s = s.replace(k, v)
return s
def extract_select_clause(sql_query):
# Define a regex pattern to match the SELECT clause up to the FROM keyword
pattern = re.compile(r"SELECT\s.*?\s(?=FROM)", re.IGNORECASE | re.DOTALL)
# Search for the pattern in the SQL query
match = pattern.search(sql_query)
if match:
# Return the matched portion (SELECT clause)
return match.group(0).strip()
else:
# Return None if no match is found
return None
def get_table_columns_list(schema):
columns = []
for table_data in schema['schema_items']:
table_name = table_data['table_name'].lower()
column_names = table_data['column_names']
column_names = [x.lower() for x in column_names]
for column in column_names:
columns.append(f"{table_name}.{column}")
columns.append(f"{table_name}.`{column}`")
columns.append(column)
columns = list(set(columns))
return columns
def get_columns_in_select_clause(sql_query, schema):
column_list = get_table_columns_list(schema)
select_clause = extract_select_clause(sql_query)
select_clause = remove_table_alias(sqlparse.format(select_clause, keyword_case = "upper", identifier_case = "lower"))
try:
sql_tokens = [token.value for token in Parser(select_clause.lower()).tokens]
except Exception as e:
sql_tokens = sql_query.lower().split()
select_columns = []
for token in sql_tokens:
if token in column_list:
select_columns.append(token)
return select_columns
def get_equation_function_in_select_clause(sql_query):
"""
equation function includes min, max, avg, sum, count, divide, +, /, case when
"""
select_clause = extract_select_clause(sql_query)
norm_select_clause = remove_table_alias(sqlparse.format(select_clause, keyword_case = "upper", identifier_case = "lower"))
try:
sql_tokens = [token.value for token in Parser(norm_select_clause.lower()).tokens]
except Exception as e:
sql_tokens = norm_select_clause.lower().split()
equation_functions = []
for token in sql_tokens:
if token in ["min", "max", "avg", "sum", "count", "divide", "+", "/", "case", "when"]:
equation_functions.append(token)
return equation_functions
def remove_tables_from_columns(columns):
new_columns = []
for col in columns:
new_columns.append(col.split('.')[-1])
return new_columns
def check_columns_match(true_columns, pred_columns):
true_columns = remove_tables_from_columns(true_columns)
pred_columns = remove_tables_from_columns(pred_columns)
# classify error types, unnecessary columns, missing columns, wrong order, return a string of error type
if true_columns == pred_columns:
return 'correct'
else:
if set(true_columns) == set(pred_columns):
return 'incorrect: wrong order'
elif set(true_columns) - set(pred_columns):
return 'incorrect: missing columns ' + str(set(true_columns) - set(pred_columns))
elif set(pred_columns) - set(true_columns):
return 'incorrect: unnecessary columns ' + str(set(pred_columns) - set(true_columns))
from sql_metadata import Parser
import re
def normalization(sql):
def white_space_fix(s):
parsed_s = Parser(s)
s = " ".join([token.value for token in parsed_s.tokens])
return s
# convert everything except text between single quotation marks to lower case
def lower(s):
in_quotation = False
out_s = ""
for char in s:
if in_quotation:
out_s += char
else:
out_s += char.lower()
if char == "'":
if in_quotation:
in_quotation = False
else:
in_quotation = True
return out_s
# remove ";"
def remove_semicolon(s):
if s.endswith(";"):
s = s[:-1]
return s
# double quotation -> single quotation
def double2single(s):
return s.replace("\"", "'")
def add_asc(s):
pattern = re.compile(
r'order by (?:\w+ \( \S+ \)|\w+\.\w+|\w+)(?: (?:\+|\-|\<|\<\=|\>|\>\=) (?:\w+ \( \S+ \)|\w+\.\w+|\w+))*')
if "order by" in s and "asc" not in s and "desc" not in s:
for p_str in pattern.findall(s):
s = s.replace(p_str, p_str + " asc")
return s
def remove_table_alias(s):
tables_aliases = Parser(s).tables_aliases
new_tables_aliases = {}
for i in range(1, 11):
if "t{}".format(i) in tables_aliases.keys():
new_tables_aliases["t{}".format(i)] = tables_aliases["t{}".format(i)]
tables_aliases = new_tables_aliases
for k, v in tables_aliases.items():
s = s.replace("as " + k + " ", "")
s = s.replace(k, v)
return s
processing_func = lambda x: remove_table_alias(add_asc(lower(white_space_fix(double2single(remove_semicolon(x))))))
return processing_func(sql)
def norm_sql_query(true_sql, schema):
try:
norm_sql = normalization(true_sql).strip()
except Exception as err:
print("Error sql: ", true_sql)
print(err)
return true_sql
sql_tokens = norm_sql.split()
for table in schema['schema_items']:
if table['table_name'] in sql_tokens: # for used tables
columns = table['column_names']
table_name = table['table_name']
if " " in table_name:
true_sql = re.sub(rf"(?<=[ \.]){table_name}(?=[ ,\.])", f"`{table_name}`", true_sql)
for column_name in columns:
if column_name.lower() in sql_tokens or table_name.lower() + "." + column_name.lower() in sql_tokens:
# use regex, if column_name_original is wrapped by spaces then replace it with `column_name_original`
if column_name in true_sql:
true_sql = re.sub(rf"(?<=[ \.]){column_name}(?=[ ,])", f"`{column_name}`", true_sql)
elif column_name.lower() in true_sql:
true_sql = re.sub(rf"(?<=[ \.]){column_name.lower()}(?=[ ,])", f"`{column_name}`", true_sql)
return true_sql